Integration and Reduction of Microarray Gene Expressions Using an Information Theory Approach
نویسندگان
چکیده مقاله:
The DNA microarray is an important technique that allows researchers to analyze many gene expression data in parallel. Although the data can be more significant if they come out of separate experiments, one of the most challenging phases in the microarray context is the integration of separate expression level datasets that have gathered through different techniques. In this paper, we present a general novel method for the integration of any collected data whose distributions have been linearly transformed. The new method is based on the information theory concepts. More than that, this article presents a new approach for checking of the linearity between two distributions as a validation technique. The validation technique assists in taking the feature reduction process in effect prior to the integration phase. The time complexity of the proposed algorithm is low and the new presented methods show good functionality. The experimental results are presented at the end of the paper.
منابع مشابه
integration and reduction of microarray gene expressions using an information theory approach
the dna microarray is an important technique that allows researchers to analyze many gene expression data in parallel. although the data can be more significant if they come out of separate experiments, one of the most challenging phases in the microarray context is the integration of separate expression level datasets that have gathered through different techniques. in this paper, we present a...
متن کاملMicroarray Information and Data Integration Using SAMIDI
Technological advances in high-throughput techniques and efficient data gathering methods, coupled computational biology efforts, have resulted in a vast amount of life science data often available in distributed and heterogeneous repositories. These repositories contain information such as sequence and structure data, annotations for biological data, results of complex computations, genetic se...
متن کاملAn Enhanced Dimension Reduction Approach for Microarray Gene Expression Data
Methods: Here, we introduce an enhancement concept that joins two dimension reduction methods of Partial Least Squares (PLS) and Minimum Average Variance Estimation (MAVE), which is called as an enhanced dimension reduction method. The PLS method generates the new transformed genes that include compressed information. Then, the MAVE method clusters samples in the same class and separate samples...
متن کاملan investigation into translation of cultural concepts by beginner and advance student using think – aloud protocols
this research aims at answering the questions about translation problems and strategies applied by translators when translating cultural concepts. in order to address this issue, qualitative and quantitative study were conducted on two groups of subjects at imam reza international university of mashhad. these two groups were assigned as beginner and advanced translation students (10 students). ...
An Information Theory Approach for Validating Clusters in Microarray Data
Cluster validation is commonly used for evaluating the quality of partition produced by any clustering algorithm. In this paper, we present a novel method to assess the quality of clustering in gene expression data. In contrast to methods which are totally based on intraand inter-cluster distances, our approach considers the dynamics and rearrangement of elements when a new cluster is introduce...
متن کاملthe aesthetic dimension of howard barkers art: a frankfurtian approach to scenes from an execution and no end of blame
رابطه ی میانِ هنر و شرایطِ اجتماعیِ زایش آن همواره در طولِ تاریخ دغدغه ی ذهنی و دل مشغولیِ اساسیِ منتقدان و نیز هنرمندان بوده است. از آنجا که هنر در قفس آهنیِ زندگیِ اجتماعی محبوس است، گسترش وابستگیِ آن با نهاد ها و اصولِ اجتماعی پیرامون، صرفِ نظر از هم سو بودن و یا غیرِ هم سو بودنِ آن نهاد ها، امری اجتناب ناپذیر به نظر می رسد. با این وجود پدیدار گشتنِ چنین مباحثِ حائز اهمییتی در میان منتقدین، با ظهورِ مکتب ما...
منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ذخیره در منابع من قبلا به منابع من ذحیره شده{@ msg_add @}
عنوان ژورنال
دوره 29 شماره 4
صفحات 19- 29
تاریخ انتشار 2010-12-01
با دنبال کردن یک ژورنال هنگامی که شماره جدید این ژورنال منتشر می شود به شما از طریق ایمیل اطلاع داده می شود.
میزبانی شده توسط پلتفرم ابری doprax.com
copyright © 2015-2023